Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10242681	0.85[CEU][hapmap]
rs10245608	0.91[ASN][1000 genomes]
rs10951647	0.89[EUR][1000 genomes]
rs11975129	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12670349	0.88[CEU][hapmap]
rs12701875	0.85[CEU][hapmap]
rs13222193	0.88[CEU][hapmap]
rs13222281	0.88[CEU][hapmap];0.81[CHD][hapmap]
rs13234888	0.88[CEU][hapmap]
rs255008	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs255009	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255010	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs255013	0.93[EUR][1000 genomes]
rs255016	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2877014	0.83[ASN][1000 genomes]
rs29533	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs29534	0.93[EUR][1000 genomes]
rs29535	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29536	0.93[EUR][1000 genomes]
rs29538	0.93[EUR][1000 genomes]
rs6951590	0.83[ASN][1000 genomes]
rs6953774	0.83[ASN][1000 genomes]
rs6962962	0.85[ASN][1000 genomes]
rs6977875	0.85[ASN][1000 genomes]
rs756439	0.85[EUR][1000 genomes]
rs7781291	0.86[ASN][1000 genomes]
rs7789435	0.85[ASN][1000 genomes]
rs7796964	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs255018	MYL7	cis	parietal	SCAN
rs255018	NPC1L1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41229600-41231400	Enhancers	HSMM	muscle
2	chr7:41229600-41232200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:41230600-41234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:41231200-41231600	Enhancers	HSMMtube	muscle

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