Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10245608	0.90[ASN][1000 genomes]
rs10951647	0.88[EUR][1000 genomes]
rs11975129	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs255008	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs255009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255010	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs255013	0.93[EUR][1000 genomes]
rs255016	0.93[EUR][1000 genomes]
rs255018	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2877014	0.80[ASN][1000 genomes]
rs29533	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29534	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29536	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29538	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6951590	0.80[ASN][1000 genomes]
rs6953774	0.81[ASN][1000 genomes]
rs6962962	0.82[ASN][1000 genomes]
rs6977875	0.82[ASN][1000 genomes]
rs756439	0.84[EUR][1000 genomes]
rs7781291	0.83[ASN][1000 genomes]
rs7789435	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
2	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
3	chr7:41222600-41226000	Weak transcription	HUVEC	blood vessel
4	chr7:41222600-41227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:41223600-41225400	Weak transcription	HMEC	breast
6	chr7:41223800-41226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:41223800-41226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:41223800-41226400	Weak transcription	NHEK	skin
9	chr7:41224400-41225400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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