Variant report

Variant	rs6951590
Chromosome Location	chr7:41258326-41258327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10155994	0.92[ASN][1000 genomes]
rs10233411	0.80[EUR][1000 genomes]
rs1024518	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245608	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11765339	0.87[ASN][1000 genomes]
rs11766626	0.92[ASN][1000 genomes]
rs11975129	0.84[ASN][1000 genomes]
rs11979846	0.85[ASN][1000 genomes]
rs12701869	0.80[EUR][1000 genomes]
rs2051868	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2051870	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs255009	0.80[ASN][1000 genomes]
rs255018	0.83[ASN][1000 genomes]
rs2877014	0.96[ASN][1000 genomes]
rs29535	0.80[ASN][1000 genomes]
rs6953774	0.96[ASN][1000 genomes]
rs6962962	0.98[ASN][1000 genomes]
rs6977875	0.98[ASN][1000 genomes]
rs7781291	0.96[ASN][1000 genomes]
rs7784685	0.93[ASN][1000 genomes]
rs7789435	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812262	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41254600-41258600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:41256000-41258800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:41257400-41262400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:41257800-41261600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41257800-41261800	Weak transcription	HMEC	breast
6	chr7:41258200-41259800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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