Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10155994	0.81[ASN][1000 genomes]
rs10242681	0.87[CEU][hapmap]
rs10245608	0.93[ASN][1000 genomes]
rs10951647	0.90[EUR][1000 genomes]
rs11766626	0.81[ASN][1000 genomes]
rs12670349	0.87[CEU][hapmap]
rs12701875	0.84[CEU][hapmap]
rs13222193	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs13222281	0.91[CEU][hapmap]
rs13234888	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs255008	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs255009	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs255010	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs255013	0.92[EUR][1000 genomes]
rs255016	0.92[EUR][1000 genomes]
rs255018	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2877014	0.84[ASN][1000 genomes]
rs29533	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29534	0.92[EUR][1000 genomes]
rs29535	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29536	0.92[EUR][1000 genomes]
rs29538	0.92[EUR][1000 genomes]
rs6951590	0.84[ASN][1000 genomes]
rs6953774	0.85[ASN][1000 genomes]
rs6962962	0.86[ASN][1000 genomes]
rs6977875	0.86[ASN][1000 genomes]
rs756439	0.86[EUR][1000 genomes]
rs7781291	0.87[ASN][1000 genomes]
rs7789435	0.86[ASN][1000 genomes]
rs7796964	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41234000-41237800	Weak transcription	Brain Substantia Nigra	brain

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