Variant report
| Variant | rs6977875 |
|---|---|
| Chromosome Location | chr7:41253995-41253996 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10155994 | 0.93[ASN][1000 genomes] |
| rs1024518 | 0.91[ASN][1000 genomes] |
| rs10245608 | 0.89[ASN][1000 genomes] |
| rs11765339 | 0.87[ASN][1000 genomes] |
| rs11766626 | 0.93[ASN][1000 genomes] |
| rs11975129 | 0.86[ASN][1000 genomes] |
| rs11979846 | 0.87[ASN][1000 genomes] |
| rs2051868 | 0.91[ASN][1000 genomes] |
| rs2051870 | 0.91[ASN][1000 genomes] |
| rs255009 | 0.82[ASN][1000 genomes] |
| rs255018 | 0.85[ASN][1000 genomes] |
| rs2877014 | 0.96[ASN][1000 genomes] |
| rs29535 | 0.82[ASN][1000 genomes] |
| rs6951590 | 0.98[ASN][1000 genomes] |
| rs6953774 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6962962 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7781291 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7784685 | 0.92[ASN][1000 genomes] |
| rs7789435 | 0.99[ASN][1000 genomes] |
| rs7812262 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv887989 | chr7:41125447-41337044 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028983 | chr7:41165668-41635954 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv534465 | chr7:41224437-41443498 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:41246200-41257000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
