Variant report

Variant	rs7784685
Chromosome Location	chr7:41265555-41265556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10155994	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1024518	0.87[ASN][1000 genomes]
rs10245608	0.83[ASN][1000 genomes]
rs11765339	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11766626	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11979846	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2051868	0.87[ASN][1000 genomes]
rs2051870	0.87[ASN][1000 genomes]
rs2051871	0.81[AMR][1000 genomes]
rs2877014	0.93[ASN][1000 genomes]
rs6951590	0.93[ASN][1000 genomes]
rs6953774	0.91[ASN][1000 genomes]
rs6962962	0.92[ASN][1000 genomes]
rs6977875	0.92[ASN][1000 genomes]
rs7781291	0.91[ASN][1000 genomes]
rs7789435	0.94[ASN][1000 genomes]
rs7812262	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41261600-41265600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:41261800-41265800	Enhancers	HMEC	breast
4	chr7:41262200-41265600	Enhancers	NHEK	skin
5	chr7:41262400-41265600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:41264400-41265800	Enhancers	Placenta	Placenta
7	chr7:41264600-41265600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:41264800-41265800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:41264800-41271800	Weak transcription	Hela-S3	cervix
10	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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