Variant report

Variant	rs2051871
Chromosome Location	chr7:41273526-41273527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41273144..41275443-chr7:41278938..41281614,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10233411	0.82[ASN][1000 genomes]
rs10951648	0.81[ASN][1000 genomes]
rs11762557	0.84[ASN][1000 genomes]
rs11765339	0.86[AMR][1000 genomes]
rs11765463	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11768019	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11768122	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12668579	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12701868	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12701869	0.82[ASN][1000 genomes]
rs12701870	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12701873	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12701874	0.87[EUR][1000 genomes]
rs12701875	0.83[CHB][hapmap]
rs13225532	0.82[EUR][1000 genomes]
rs13244372	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13311231	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1557928	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1557930	0.85[EUR][1000 genomes]
rs2051869	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255014	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs255017	0.81[EUR][1000 genomes]
rs34965184	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215033	0.94[ASN][1000 genomes]
rs6951425	0.81[CEU][hapmap];0.92[CHB][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6955027	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6966153	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6974692	0.81[ASN][1000 genomes]
rs7782143	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7784685	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41271200-41273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:41272000-41274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:41272000-41277200	Weak transcription	NHDF-Ad	bronchial
6	chr7:41272200-41273800	Weak transcription	HMEC	breast
7	chr7:41272200-41274200	Weak transcription	NHEK	skin
8	chr7:41272200-41277000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:41272200-41277200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:41272200-41277200	Weak transcription	Hela-S3	cervix
11	chr7:41272200-41277800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:41272400-41277400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:41272800-41275000	Enhancers	Osteobl	bone
14	chr7:41273000-41274800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:41273000-41275000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:41273200-41274600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links