Variant report

Variant	rs12701870
Chromosome Location	chr7:41262307-41262308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41261382..41263717-chr7:41269869..41272043,2	MCF-7	breast:
2	chr7:41255712..41257388-chr7:41260723..41262857,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10233411	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11765463	0.95[EUR][1000 genomes]
rs11768019	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11768122	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12668579	0.95[EUR][1000 genomes]
rs12701868	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12701869	0.88[ASN][1000 genomes]
rs12701873	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12701874	0.84[EUR][1000 genomes]
rs12701875	0.84[CHB][hapmap]
rs13225532	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13244372	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13311231	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1557928	0.95[EUR][1000 genomes]
rs1557930	0.83[EUR][1000 genomes]
rs2051869	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2051871	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255012	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255014	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255015	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255017	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs29530	0.82[EUR][1000 genomes]
rs29532	0.82[EUR][1000 genomes]
rs29537	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs29539	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34965184	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56215033	0.93[ASN][1000 genomes]
rs6951425	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6955027	0.95[EUR][1000 genomes]
rs6966153	0.87[EUR][1000 genomes]
rs756439	0.83[ASN][1000 genomes]
rs7782143	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41257400-41262400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:41259400-41263800	Weak transcription	NH-A	brain
3	chr7:41259400-41278400	Weak transcription	HSMM	muscle
4	chr7:41260800-41264800	Enhancers	Hela-S3	cervix
5	chr7:41261600-41265600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41261800-41263400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:41261800-41264600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:41261800-41265800	Enhancers	HMEC	breast
9	chr7:41262000-41262800	Weak transcription	Placenta	Placenta
10	chr7:41262000-41263000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:41262200-41265600	Enhancers	NHEK	skin

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