Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10246308	0.85[ASN][1000 genomes]
rs10258437	0.85[ASN][1000 genomes]
rs11505535	0.82[ASN][1000 genomes]
rs11762557	0.83[ASN][1000 genomes]
rs11765463	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11768019	0.82[EUR][1000 genomes]
rs11768187	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12154794	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12155345	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12668579	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12701870	0.87[EUR][1000 genomes]
rs12701873	0.90[EUR][1000 genomes]
rs12701882	0.85[ASN][1000 genomes]
rs13244372	0.89[EUR][1000 genomes]
rs1545195	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1557928	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2051869	0.89[EUR][1000 genomes]
rs2051871	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34965184	0.89[EUR][1000 genomes]
rs6955027	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs718224	0.99[ASN][1000 genomes]
rs7782143	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41296800-41343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41303200-41303800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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