Variant report

Variant	rs29537
Chromosome Location	chr7:41226266-41226267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41218957..41220551-chr7:41225375..41228012,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10951647	0.85[ASN][1000 genomes]
rs11768019	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11768122	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12532282	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12701868	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12701870	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13225532	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13311231	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs255008	0.91[ASN][1000 genomes]
rs255010	0.91[ASN][1000 genomes]
rs255012	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255013	0.89[ASN][1000 genomes]
rs255014	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255015	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255016	0.89[ASN][1000 genomes]
rs255017	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29512	0.84[ASN][1000 genomes]
rs29513	0.84[ASN][1000 genomes]
rs29514	0.84[ASN][1000 genomes]
rs29515	0.84[ASN][1000 genomes]
rs29518	0.84[ASN][1000 genomes]
rs29521	0.84[ASN][1000 genomes]
rs29525	0.84[ASN][1000 genomes]
rs29526	0.84[ASN][1000 genomes]
rs29530	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29532	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29533	0.91[ASN][1000 genomes]
rs29534	0.91[ASN][1000 genomes]
rs29536	0.91[ASN][1000 genomes]
rs29538	0.91[ASN][1000 genomes]
rs29539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215033	0.80[ASN][1000 genomes]
rs6951425	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs756439	0.81[ASN][1000 genomes]
rs7782143	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
2	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
3	chr7:41222600-41227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:41223800-41226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:41223800-41226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:41223800-41226400	Weak transcription	NHEK	skin
7	chr7:41225400-41231000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:41225600-41226800	Weak transcription	NHLF	lung
9	chr7:41225800-41226800	Weak transcription	NHDF-Ad	bronchial
10	chr7:41226000-41226400	Weak transcription	HMEC	breast
11	chr7:41226000-41228000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:41226000-41231000	Enhancers	HUVEC	blood vessel
13	chr7:41226200-41227800	Enhancers	Hela-S3	cervix

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