Variant report

Variant	rs12705155
Chromosome Location	chr7:103394799-103394800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11976933	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1705109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299378	0.91[MEX][hapmap]
rs2299379	0.82[MEX][hapmap]
rs28438024	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4403345	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs473940	0.81[AMR][1000 genomes]
rs477444	0.80[AMR][1000 genomes]
rs478549	0.96[MEX][hapmap]
rs492063	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs507226	0.81[CEU][hapmap];0.95[MEX][hapmap]
rs525692	0.80[AMR][1000 genomes]
rs528528	0.95[MEX][hapmap];0.81[AMR][1000 genomes]
rs538258	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs541768	1.00[MEX][hapmap]
rs562393	0.80[AMR][1000 genomes]
rs570377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs607755	1.00[MEX][hapmap];0.84[TSI][hapmap]
rs620243	0.80[CEU][hapmap]
rs620774	0.81[AMR][1000 genomes]
rs622657	1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs637577	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs651097	1.00[MEX][hapmap];0.82[TSI][hapmap]
rs678473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs683390	0.81[AMR][1000 genomes]
rs6953960	0.96[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12705155	CYP3A4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103390000-103434000	Weak transcription	K562	blood
2	chr7:103393400-103405400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links