Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12705155	0.82[MEX][hapmap]
rs13239238	0.83[JPT][hapmap]
rs2237633	0.83[JPT][hapmap]
rs2299377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299378	0.82[CHD][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes]
rs2299380	0.83[AMR][1000 genomes]
rs473940	0.82[ASN][1000 genomes]
rs477444	0.82[ASN][1000 genomes]
rs478549	0.82[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs507226	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs512529	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs525692	0.82[ASN][1000 genomes]
rs528528	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs531330	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs541768	0.83[JPT][hapmap]
rs562393	0.82[ASN][1000 genomes]
rs562444	0.82[ASN][1000 genomes]
rs570418	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs571990	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs607755	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs620243	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs621223	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs621311	0.80[ASN][1000 genomes]
rs622657	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs637577	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs637606	0.82[ASN][1000 genomes]
rs651097	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs671372	0.86[AMR][1000 genomes]
rs682507	0.82[ASN][1000 genomes]
rs683390	0.82[ASN][1000 genomes]
rs6953960	0.82[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2299379	GIGYF1	cis	parietal	SCAN
rs2299379	C7orf61	cis	parietal	SCAN
rs2299379	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103355400-103374800	Weak transcription	HepG2	liver
2	chr7:103371800-103374200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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