Variant report

Variant	rs2237633
Chromosome Location	chr7:103379897-103379898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103373703..103377683-chr7:103378422..103380704,3	K562	blood:
2	chr7:103374430..103376979-chr7:103378353..103381015,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12536739	0.83[AFR][1000 genomes]
rs12540537	0.82[JPT][hapmap]
rs13239238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299374	0.82[JPT][hapmap]
rs2299378	0.86[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2299379	0.83[JPT][hapmap]
rs2299380	0.87[ASN][1000 genomes]
rs3213613	0.80[ASN][1000 genomes]
rs35441390	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36011270	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473940	0.84[ASN][1000 genomes]
rs477444	0.84[ASN][1000 genomes]
rs478549	0.81[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs507226	0.95[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs512529	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs525692	0.84[ASN][1000 genomes]
rs528528	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs531330	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs541768	0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs562393	0.84[ASN][1000 genomes]
rs562444	0.84[ASN][1000 genomes]
rs570418	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs571990	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs607755	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs620243	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs620774	0.88[ASN][1000 genomes]
rs621223	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs621311	0.82[ASN][1000 genomes]
rs622657	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs62480693	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs637577	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs637606	0.84[ASN][1000 genomes]
rs651097	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs671372	0.81[ASN][1000 genomes]
rs682507	0.84[ASN][1000 genomes]
rs683390	0.84[ASN][1000 genomes]
rs6953960	0.81[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518040	chr7:103375437-103379897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv524344	chr7:103375437-103379897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103375200-103391000	Weak transcription	HepG2	liver

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