Variant report

Variant	rs12705406
Chromosome Location	chr7:106792554-106792555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106790717..106794481-chr7:106808251..106810689,4	MCF-7	breast:
2	chr7:106791621..106793929-chr7:107384151..107385993,2	K562	blood:
3	chr7:106785772..106788697-chr7:106791053..106792877,2	K562	blood:
4	chr7:106591017..106592710-chr7:106791825..106794582,2	K562	blood:
5	chr7:106646754..106649589-chr7:106791342..106793734,2	K562	blood:
6	chr7:106791219..106793947-chr7:106800933..106803916,2	K562	blood:
7	chr7:106586596..106588761-chr7:106790457..106792904,2	K562	blood:
8	chr7:106787472..106790452-chr7:106792123..106795407,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction
ENSG00000241764	Chromatin interaction
ENSG00000105879	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12155231	1.00[ASN][1000 genomes]
rs12532514	1.00[ASN][1000 genomes]
rs12535081	1.00[ASN][1000 genomes]
rs12535258	1.00[ASN][1000 genomes]
rs12538090	1.00[ASN][1000 genomes]
rs12538769	1.00[ASN][1000 genomes]
rs12538848	1.00[ASN][1000 genomes]
rs257378	0.89[AFR][1000 genomes]
rs257385	0.89[AFR][1000 genomes]
rs257386	0.89[AFR][1000 genomes]
rs257387	0.89[AFR][1000 genomes]
rs4730233	1.00[ASN][1000 genomes]
rs6946931	0.89[AFR][1000 genomes]
rs7783562	0.82[AMR][1000 genomes]
rs7804979	1.00[ASN][1000 genomes]
rs7807648	1.00[ASN][1000 genomes]
rs7809508	1.00[ASN][1000 genomes]
rs7810216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12705406	GPR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:106778400-106807800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:106780000-106807800	Weak transcription	Fetal Heart	heart
6	chr7:106782000-106795400	Weak transcription	Pancreas	Pancrea
7	chr7:106782600-106808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:106782800-106807800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:106783600-106807600	Weak transcription	Fetal Stomach	stomach
10	chr7:106784200-106802600	Strong transcription	K562	blood
11	chr7:106785400-106808000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:106785800-106807600	Weak transcription	Fetal Kidney	kidney
13	chr7:106787400-106805800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:106788000-106805800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:106788000-106808000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:106788200-106807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:106788400-106794000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:106788400-106808000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:106788600-106805800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:106788800-106797200	Weak transcription	Placenta	Placenta
21	chr7:106788800-106797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:106788800-106805800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:106788800-106807200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:106788800-106807600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:106788800-106807800	Weak transcription	Ovary	ovary
26	chr7:106789400-106808200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:106790000-106792600	Weak transcription	Hela-S3	cervix
28	chr7:106790000-106807200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:106790800-106797800	Weak transcription	Spleen	Spleen
30	chr7:106791000-106799400	Weak transcription	HUVEC	blood vessel
31	chr7:106791000-106805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:106791000-106806800	Weak transcription	Fetal Intestine Large	intestine
33	chr7:106791000-106807600	Weak transcription	Brain Anterior Caudate	brain
34	chr7:106791200-106795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:106791200-106799400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr7:106791200-106807800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr7:106791800-106792800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:106791800-106793000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:106791800-106793000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr7:106791800-106794400	Strong transcription	Adipose Nuclei	Adipose
41	chr7:106792000-106792800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:106792000-106792800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:106792000-106792800	Enhancers	NH-A	brain
44	chr7:106792000-106792800	Enhancers	NHDF-Ad	bronchial
45	chr7:106792000-106792800	Enhancers	NHLF	lung
46	chr7:106792000-106793000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:106792000-106793000	Enhancers	HMEC	breast
48	chr7:106792200-106793000	Strong transcription	Fetal Brain Female	brain
49	chr7:106792200-106808400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:106792400-106792800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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