Variant report

Variant	rs12705407
Chromosome Location	chr7:106817433-106817434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:106816812-106818063	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
2	chr7:106813942..106815556-chr7:106815570..106817653,2	MCF-7	breast:
3	chr7:106817268..106819848-chr7:106864342..106867128,2	MCF-7	breast:
4	chr7:106816787..106818629-chr7:106826210..106828534,2	K562	blood:

Variant related genes	Relation type
HBP1	TF binding region
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12705408	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106810600-106818200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr7:106810600-106836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:106810800-106826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:106810800-106828200	Weak transcription	Esophagus	oesophagus
5	chr7:106810800-106836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:106811000-106820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:106811000-106820200	Weak transcription	HSMM	muscle
8	chr7:106811000-106824200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:106811000-106826800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:106811000-106826800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:106811000-106828800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:106811200-106817800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr7:106811200-106818800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:106811200-106819400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:106811200-106821600	Weak transcription	Thymus	Thymus
16	chr7:106811400-106819800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:106811400-106819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:106811400-106820000	Weak transcription	NH-A	brain
19	chr7:106811400-106820200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:106811400-106820200	Weak transcription	NHEK	skin
21	chr7:106811400-106820400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:106811400-106824800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:106811400-106825200	Weak transcription	Lung	lung
24	chr7:106811400-106825800	Weak transcription	NHLF	lung
25	chr7:106812000-106820000	Weak transcription	HepG2	liver
26	chr7:106812200-106817600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr7:106812200-106819800	Weak transcription	Dnd41	blood
28	chr7:106812200-106820000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr7:106812200-106820000	Weak transcription	Small Intestine	intestine
30	chr7:106812200-106820200	Weak transcription	Gastric	stomach
31	chr7:106812200-106820400	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:106812200-106825200	Weak transcription	Aorta	Aorta
33	chr7:106812400-106819800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:106812400-106820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:106812400-106820200	Weak transcription	Placenta	Placenta
36	chr7:106812400-106822600	Weak transcription	Fetal Brain Male	brain
37	chr7:106812400-106826200	Weak transcription	Spleen	Spleen
38	chr7:106812600-106819600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:106812800-106818000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr7:106812800-106819800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:106813200-106820000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr7:106813200-106820200	Weak transcription	Osteobl	bone
43	chr7:106813400-106819800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr7:106814000-106822600	Weak transcription	Fetal Brain Female	brain
45	chr7:106814400-106819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:106814600-106818000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr7:106814600-106820000	Weak transcription	HUVEC	blood vessel
48	chr7:106814800-106819800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:106814800-106820400	Weak transcription	Fetal Stomach	stomach
50	chr7:106814800-106821000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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