Variant report

Variant	rs12705408
Chromosome Location	chr7:106871952-106871953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106867727..106869473-chr7:106870758..106873227,2	MCF-7	breast:
2	chr7:106869281..106872161-chr7:106872370..106874834,2	K562	blood:
3	chr7:106853912..106855685-chr7:106871088..106873381,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11762802	1.00[AMR][1000 genomes]
rs12705407	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106844200-106873200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:106844600-106873600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:106844600-106880400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:106849000-106873200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:106849200-106872600	Weak transcription	HSMM	muscle
8	chr7:106850400-106890000	Weak transcription	Hela-S3	cervix
9	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:106851000-106873600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
13	chr7:106851200-106873200	Weak transcription	Pancreas	Pancrea
14	chr7:106851200-106874800	Weak transcription	Ovary	ovary
15	chr7:106851200-106882200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:106851200-106888200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:106851200-106892400	Weak transcription	Gastric	stomach
18	chr7:106851200-106892600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:106851400-106873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:106854400-106878000	Weak transcription	K562	blood
22	chr7:106855200-106873600	Weak transcription	Right Ventricle	heart
23	chr7:106855600-106883000	Weak transcription	Dnd41	blood
24	chr7:106857200-106877000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:106860200-106882600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:106861400-106873200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:106861600-106876200	Weak transcription	Fetal Brain Female	brain
28	chr7:106863600-106874000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:106863800-106873200	Weak transcription	Psoas Muscle	Psoas
30	chr7:106863800-106873200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:106863800-106887400	Weak transcription	Thymus	Thymus
32	chr7:106864000-106875800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:106864000-106878400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:106864000-106889600	Weak transcription	Spleen	Spleen
35	chr7:106865000-106887000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:106865200-106872800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:106865200-106873600	Weak transcription	Right Atrium	heart
38	chr7:106865200-106884400	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:106865400-106873600	Weak transcription	GM12878-XiMat	blood
40	chr7:106865400-106884400	Weak transcription	Fetal Thymus	thymus
41	chr7:106865600-106873200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:106865600-106873200	Weak transcription	Left Ventricle	heart
43	chr7:106865600-106873600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:106865600-106874400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:106865600-106876200	Weak transcription	Fetal Intestine Large	intestine
46	chr7:106865600-106877400	Weak transcription	Brain Angular Gyrus	brain
47	chr7:106865600-106888200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr7:106865600-106890600	Weak transcription	Aorta	Aorta
49	chr7:106865600-106892400	Weak transcription	HepG2	liver
50	chr7:106865800-106873200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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