Variant report
Variant | rs12706389 |
---|---|
Chromosome Location | chr7:121833023-121833024 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11972442 | 0.85[AFR][1000 genomes] |
rs11977281 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12706390 | 0.85[CEU][hapmap];1.00[YRI][hapmap] |
rs13232539 | 0.82[AMR][1000 genomes] |
rs157656 | 0.96[EUR][1000 genomes] |
rs2134057 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
rs2218377 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs279691 | 0.96[EUR][1000 genomes] |
rs279697 | 0.96[EUR][1000 genomes] |
rs284365 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs616904 | 1.00[ASN][1000 genomes] |
rs62472932 | 1.00[ASN][1000 genomes] |
rs627355 | 0.85[CEU][hapmap];0.92[GIH][hapmap];0.92[TSI][hapmap] |
rs627845 | 0.85[CEU][hapmap] |
rs628339 | 0.85[CEU][hapmap] |
rs675027 | 1.00[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv427803 | chr7:121701581-121876302 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1034624 | chr7:121813180-121899703 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1034797 | chr7:121815255-121897109 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1028221 | chr7:121818974-121899162 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1024868 | chr7:121818974-121899703 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:121832000-121838600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |