Variant report

Variant	rs157656
Chromosome Location	chr7:121797035-121797036
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11977281	0.96[EUR][1000 genomes]
rs12670591	0.96[ASN][1000 genomes]
rs12706389	0.96[EUR][1000 genomes]
rs2218377	1.00[EUR][1000 genomes]
rs279679	0.82[AMR][1000 genomes]
rs279691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs279697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279700	0.82[AMR][1000 genomes]
rs284365	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57231107	0.94[ASN][1000 genomes]
rs73717802	0.94[ASN][1000 genomes]
rs73721103	0.94[ASN][1000 genomes]
rs73721106	0.94[ASN][1000 genomes]
rs73721108	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019004	chr7:121733372-121800380	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034553	chr7:121734934-121800380	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121785800-121799600	Weak transcription	Left Ventricle	heart
2	chr7:121785800-121806400	Weak transcription	Pancreas	Pancrea
3	chr7:121795400-121797800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:121795600-121797600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:121796400-121797800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:121796400-121797800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr7:121796800-121797200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:121796800-121797800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:121797000-121797400	Weak transcription	Ovary	ovary
10	chr7:121797000-121801400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:121797000-121801600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:121797000-121801800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links