Variant report
| Variant | rs12706765 |
|---|---|
| Chromosome Location | chr7:126810269-126810270 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10251787 | 0.95[CEU][hapmap] |
| rs10954145 | 1.00[CEU][hapmap] |
| rs10954146 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11266838 | 0.95[CEU][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11563716 | 0.82[AFR][1000 genomes] |
| rs12534833 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12706764 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12706767 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12706768 | 1.00[CEU][hapmap] |
| rs13244682 | 1.00[CEU][hapmap] |
| rs1361959 | 1.00[CEU][hapmap] |
| rs1361961 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1419426 | 1.00[CEU][hapmap] |
| rs1557642 | 1.00[CEU][hapmap] |
| rs17864141 | 1.00[CEU][hapmap] |
| rs2299546 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs5022883 | 1.00[CEU][hapmap] |
| rs886001 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
