Variant report

Variant	rs13244682
Chromosome Location	chr7:126810038-126810039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10251787	0.95[CEU][hapmap]
rs10954145	1.00[CEU][hapmap]
rs10954146	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111183	0.87[YRI][hapmap]
rs11266838	0.95[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563356	0.87[YRI][hapmap]
rs12534833	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706761	0.87[YRI][hapmap]
rs12706762	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs12706764	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706765	1.00[CEU][hapmap]
rs12706767	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706768	1.00[CEU][hapmap]
rs13223635	1.00[YRI][hapmap]
rs13234354	0.87[YRI][hapmap]
rs13239559	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs1361959	1.00[CEU][hapmap]
rs1361961	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419426	1.00[CEU][hapmap]
rs1419442	0.87[YRI][hapmap]
rs1557642	1.00[CEU][hapmap]
rs1557644	0.87[YRI][hapmap]
rs1557645	0.87[YRI][hapmap]
rs17864141	1.00[CEU][hapmap]
rs17869420	1.00[CHB][hapmap]
rs2299536	0.87[YRI][hapmap]
rs2299546	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4728065	0.87[YRI][hapmap]
rs5022883	1.00[CEU][hapmap]
rs886001	1.00[CEU][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs916608	0.87[YRI][hapmap]
rs929172	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links