Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:126754803-126755064	MCF10A-Er-Src	breast:	n/a	chr7:126754903-126754910 chr7:126754928-126754936 chr7:126754902-126754910 chr7:126754902-126754911 chr7:126754901-126754910 chr7:126754928-126754935

Variant related genes	Relation type
GRM8	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1111183	1.00[YRI][hapmap]
rs11563356	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12706761	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13223635	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13234354	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13239559	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244682	0.87[YRI][hapmap]
rs1361961	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1419442	1.00[YRI][hapmap]
rs1557644	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1557645	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17863206	0.88[YRI][hapmap]
rs17869426	0.87[YRI][hapmap]
rs2299531	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2299532	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2299536	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4728065	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs886001	1.00[YRI][hapmap]
rs916608	1.00[YRI][hapmap]
rs929172	0.84[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs950527	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv971570	chr7:126753415-126757393	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126753400-126755400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:126754000-126755200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr7:126754200-126755400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:126754400-126755200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:126754400-126755200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:126754400-126755200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:126754400-126755400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:126754400-126755400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:126755000-126755200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:126755000-126755400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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