Variant report

Variant	rs12709242
Chromosome Location	chr17:67219460-67219461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs8070232	0.85[CHB][hapmap]
rs9302891	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv457888	chr17:67149973-67226643	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv575931	chr17:67149973-67226643	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv516799	chr17:67210267-67231581	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv457889	chr17:67210992-67332355	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
8	nsv575934	chr17:67210992-67332355	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67144000-67236000	Weak transcription	Psoas Muscle	Psoas
2	chr17:67160600-67220000	Weak transcription	Fetal Lung	lung
3	chr17:67173400-67230000	Weak transcription	Pancreas	Pancrea
4	chr17:67189800-67221400	Weak transcription	Right Ventricle	heart
5	chr17:67207600-67247800	Weak transcription	Left Ventricle	heart
6	chr17:67209800-67223200	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:67210000-67219800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr17:67210400-67219800	Weak transcription	GM12878-XiMat	blood
9	chr17:67213800-67220000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:67213800-67230400	Weak transcription	Brain Angular Gyrus	brain
11	chr17:67215000-67220000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:67215600-67219800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr17:67215600-67219800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr17:67215600-67220000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:67215600-67222400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr17:67215600-67222600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr17:67215600-67222600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr17:67215600-67239200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr17:67215600-67249200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:67216400-67219800	Weak transcription	Right Atrium	heart
21	chr17:67216800-67224800	Weak transcription	NHDF-Ad	bronchial
22	chr17:67217000-67222000	Weak transcription	Liver	Liver
23	chr17:67218600-67219800	Weak transcription	Ovary	ovary
24	chr17:67218600-67220000	Weak transcription	Adipose Nuclei	Adipose
25	chr17:67218600-67221800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr17:67218600-67223800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr17:67218800-67220000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr17:67218800-67220400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr17:67218800-67221000	Enhancers	Primary T cells from cord blood	blood
30	chr17:67219000-67219800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr17:67219000-67220800	Enhancers	HepG2	liver
32	chr17:67219200-67220400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr17:67219200-67221600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:67219400-67219800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:67219400-67220400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:67219400-67220600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr17:67219400-67221600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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