Variant report

Variant	rs9302891
Chromosome Location	chr17:67224847-67224848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67220676..67223689-chr17:67224007..67226701,3	K562	blood:

Variant related genes	Relation type
ENSG00000154263	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12709242	0.85[JPT][hapmap]
rs1420904	0.88[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17686852	0.88[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457888	chr17:67149973-67226643	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv575931	chr17:67149973-67226643	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv516799	chr17:67210267-67231581	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv457889	chr17:67210992-67332355	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
6	nsv575934	chr17:67210992-67332355	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67144000-67236000	Weak transcription	Psoas Muscle	Psoas
2	chr17:67173400-67230000	Weak transcription	Pancreas	Pancrea
3	chr17:67207600-67247800	Weak transcription	Left Ventricle	heart
4	chr17:67213800-67230400	Weak transcription	Brain Angular Gyrus	brain
5	chr17:67215600-67239200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr17:67215600-67249200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr17:67219800-67225600	Active TSS	Right Atrium	heart
8	chr17:67220400-67231200	Weak transcription	Osteobl	bone
9	chr17:67220600-67226200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr17:67221600-67225200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:67221800-67225200	Active TSS	Ovary	ovary
12	chr17:67222600-67225000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:67222600-67225400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr17:67222800-67225400	Enhancers	Primary hematopoietic stem cells	blood
15	chr17:67223000-67225400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr17:67223000-67235600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr17:67223200-67225000	Active TSS	Fetal Muscle Leg	muscle
18	chr17:67223400-67225200	Enhancers	Primary T cells from cord blood	blood
19	chr17:67223600-67225000	Active TSS	Fetal Lung	lung
20	chr17:67223600-67225200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr17:67223800-67225200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr17:67224400-67225000	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr17:67224400-67225400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:67224400-67225600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:67224600-67225000	Active TSS	Adipose Nuclei	Adipose
26	chr17:67224600-67248600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr17:67224800-67225000	Flanking Active TSS	Liver	Liver
28	chr17:67224800-67225000	Enhancers	Rectal Smooth Muscle	rectum
29	chr17:67224800-67225200	Enhancers	Brain Cingulate Gyrus	brain
30	chr17:67224800-67225600	Enhancers	NHDF-Ad	bronchial

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