Variant report

Variant	rs1420904
Chromosome Location	chr17:67245941-67245942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17686852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs471193	0.84[YRI][hapmap]
rs531586	0.83[YRI][hapmap]
rs9302891	0.88[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv457889	chr17:67210992-67332355	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
3	nsv575934	chr17:67210992-67332355	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
4	nsv1055156	chr17:67239695-67272311	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a
5	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3385918	chr17:67244757-67249155	Weak transcription Strong transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67207600-67247800	Weak transcription	Left Ventricle	heart
2	chr17:67215600-67249200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:67224600-67248600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr17:67230600-67259600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr17:67230800-67253400	Weak transcription	Fetal Muscle Leg	muscle
6	chr17:67230800-67271800	Weak transcription	Pancreas	Pancrea
7	chr17:67231600-67246600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:67231800-67247000	Weak transcription	Primary T cells from cord blood	blood
9	chr17:67231800-67247000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr17:67231800-67247000	Weak transcription	HUVEC	blood vessel
11	chr17:67231800-67249000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:67231800-67252600	Weak transcription	Fetal Thymus	thymus
13	chr17:67231800-67254400	Weak transcription	Lung	lung
14	chr17:67232600-67249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:67234600-67249200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:67234800-67250600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr17:67235000-67289000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr17:67236000-67283000	Weak transcription	Ovary	ovary
19	chr17:67236400-67252400	Weak transcription	Fetal Lung	lung
20	chr17:67236400-67278000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:67236600-67248600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr17:67236600-67251600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr17:67236800-67249000	Weak transcription	Brain Anterior Caudate	brain
24	chr17:67236800-67280800	Weak transcription	Brain Angular Gyrus	brain
25	chr17:67236800-67298800	Weak transcription	Psoas Muscle	Psoas
26	chr17:67237200-67246400	Weak transcription	Aorta	Aorta
27	chr17:67237800-67247000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr17:67238200-67248600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr17:67238600-67247400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr17:67238800-67278000	Weak transcription	Thymus	Thymus
31	chr17:67239200-67248400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr17:67239200-67262400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr17:67239400-67252400	Weak transcription	HMEC	breast
34	chr17:67239600-67251000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:67240000-67247400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr17:67240000-67248400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr17:67240000-67289200	Weak transcription	Esophagus	oesophagus
38	chr17:67240000-67296000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr17:67240200-67248200	Weak transcription	Fetal Intestine Small	intestine
40	chr17:67240800-67248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr17:67242000-67249000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr17:67242000-67260600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr17:67242000-67265000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr17:67242200-67248400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr17:67242200-67249200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr17:67242200-67250400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr17:67242200-67265000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr17:67242200-67265000	Weak transcription	NHEK	skin
49	chr17:67242400-67247000	Weak transcription	Osteobl	bone
50	chr17:67242400-67248600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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