Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10192472	0.81[AMR][1000 genomes]
rs10198054	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11891469	0.80[ASN][1000 genomes]
rs12464083	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12613732	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12617279	0.84[ASN][1000 genomes]
rs12621518	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12621546	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12621813	0.84[ASN][1000 genomes]
rs12712302	0.80[ASN][1000 genomes]
rs12712303	0.80[ASN][1000 genomes]
rs12712304	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12712305	0.83[ASN][1000 genomes]
rs12712306	0.81[ASN][1000 genomes]
rs13009298	0.80[ASN][1000 genomes]
rs1862983	0.81[ASN][1000 genomes]
rs2194455	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4951960	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4952040	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6734015	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7605982	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31246400-31261600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:31251400-31270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:31257800-31259600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:31258000-31258800	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search: