Variant report

Variant	rs7605982
Chromosome Location	chr2:31252926-31252927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10198054	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10865086	0.84[AMR][1000 genomes]
rs12464083	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12613732	0.94[CEU][hapmap];0.88[CHB][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12617279	0.89[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12621546	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12712301	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12712304	0.83[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs12999804	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs13009779	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1862966	0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs1862967	0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs1862968	0.84[AMR][1000 genomes]
rs2194455	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245765	0.82[EUR][1000 genomes]
rs4245766	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4951960	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5009910	0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs7558425	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31246400-31261600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:31250200-31254200	Weak transcription	Primary B cells from cord blood	blood
3	chr2:31251400-31270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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