Variant report
| Variant | rs12714483 |
|---|---|
| Chromosome Location | chr3:79637418-79637419 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr3:79637290-79637421 | A549 | lung: | n/a | chr3:79637402-79637413 chr3:79637402-79637415 chr3:79637402-79637413 chr3:79637402-79637415 chr3:79637402-79637415 |
| 2 | REST | chr3:79636744-79637432 | H1-neurons | neurons: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000216116 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11924917 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7615611 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs7624639 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap] |
| rs7627338 | 1.00[ASN][1000 genomes] |
| rs7637332 | 1.00[CHB][hapmap] |
| rs9814178 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9816905 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9820160 | 1.00[CHB][hapmap] |
| rs9835692 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap] |
| rs9837046 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9840422 | 1.00[CHB][hapmap] |
| rs9863111 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap] |
| rs9875064 | 0.85[EUR][1000 genomes] |
| rs9883211 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3394288 | chr3:79545122-79715746 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv877021 | chr3:79560604-79892470 | Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv877022 | chr3:79585158-79760774 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1009391 | chr3:79604443-80035898 | Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
