Variant report

Variant	rs9875064
Chromosome Location	chr3:79648736-79648737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12714483	0.86[GIH][hapmap];0.85[EUR][1000 genomes]
rs7622444	1.00[CHD][hapmap]
rs9814178	0.85[EUR][1000 genomes]
rs9816905	0.85[EUR][1000 genomes]
rs9837046	0.92[EUR][1000 genomes]
rs9840422	1.00[CHD][hapmap]
rs9883885	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394288	chr3:79545122-79715746	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877021	chr3:79560604-79892470	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv877022	chr3:79585158-79760774	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79648000-79649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:79648200-79649200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:79648200-79649200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:79648200-79649200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:79648400-79649400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:79648600-79649000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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