Variant report
Variant | rs12716880 |
---|---|
Chromosome Location | chr16:79777423-79777424 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10871377 | 0.99[ASN][1000 genomes] |
rs10871378 | 0.84[CEU][hapmap];0.91[CHB][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11150194 | 0.99[ASN][1000 genomes] |
rs11150195 | 0.99[ASN][1000 genomes] |
rs11150196 | 0.99[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs11150197 | 0.89[CHB][hapmap];0.98[ASN][1000 genomes] |
rs11150198 | 0.94[ASN][1000 genomes] |
rs11640485 | 0.80[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs11640827 | 0.84[ASN][1000 genomes] |
rs11646174 | 0.91[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs11648369 | 0.96[ASN][1000 genomes] |
rs11649433 | 0.82[ASN][1000 genomes] |
rs11649483 | 0.96[ASN][1000 genomes] |
rs11864576 | 0.99[ASN][1000 genomes] |
rs11864742 | 0.99[ASN][1000 genomes] |
rs12373096 | 0.99[ASN][1000 genomes] |
rs12598937 | 0.88[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs12599770 | 0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12600028 | 0.83[AFR][1000 genomes];0.85[ASN][1000 genomes] |
rs12921991 | 0.88[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs12932883 | 0.82[ASN][1000 genomes] |
rs12935201 | 0.86[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs13337701 | 0.85[CEU][hapmap];0.80[EUR][1000 genomes] |
rs13337703 | 0.80[EUR][1000 genomes] |
rs13338008 | 0.85[CEU][hapmap] |
rs13338235 | 0.81[EUR][1000 genomes] |
rs16951312 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs16951359 | 0.85[CEU][hapmap] |
rs3813578 | 0.99[ASN][1000 genomes] |
rs4243178 | 0.96[ASN][1000 genomes] |
rs4243179 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs4274450 | 0.85[ASN][1000 genomes] |
rs4296269 | 0.93[CEU][hapmap];0.85[EUR][1000 genomes] |
rs4319779 | 0.82[EUR][1000 genomes] |
rs4319782 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4325577 | 0.94[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs4360949 | 0.96[ASN][1000 genomes] |
rs4372706 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
rs4387616 | 0.80[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs4395087 | 0.88[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs4420544 | 0.96[ASN][1000 genomes] |
rs4426362 | 0.82[AFR][1000 genomes];0.81[ASN][1000 genomes] |
rs4435267 | 0.91[CHB][hapmap];0.97[ASN][1000 genomes] |
rs4450408 | 0.81[ASN][1000 genomes] |
rs4470160 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4485383 | 0.91[CHB][hapmap];0.97[ASN][1000 genomes] |
rs4506910 | 0.82[ASN][1000 genomes] |
rs4547344 | 0.85[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4556800 | 0.84[ASN][1000 genomes] |
rs4567730 | 0.82[EUR][1000 genomes] |
rs4603571 | 0.81[EUR][1000 genomes] |
rs4609863 | 0.82[ASN][1000 genomes] |
rs4614737 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
rs4632143 | 0.97[ASN][1000 genomes] |
rs4632146 | 0.82[EUR][1000 genomes] |
rs4633733 | 0.82[EUR][1000 genomes] |
rs4889017 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs4889018 | 0.99[ASN][1000 genomes] |
rs4889019 | 0.85[ASN][1000 genomes] |
rs4889020 | 0.88[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs4889021 | 0.98[ASN][1000 genomes] |
rs4889022 | 0.82[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs4889024 | 0.81[EUR][1000 genomes] |
rs4889026 | 0.85[CEU][hapmap] |
rs59680118 | 0.82[EUR][1000 genomes] |
rs60153062 | 0.82[EUR][1000 genomes] |
rs62041321 | 0.83[EUR][1000 genomes] |
rs62041342 | 0.82[EUR][1000 genomes] |
rs62041343 | 0.82[EUR][1000 genomes] |
rs6564694 | 0.92[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs6564697 | 0.82[EUR][1000 genomes] |
rs6564698 | 0.84[EUR][1000 genomes] |
rs6564702 | 0.81[EUR][1000 genomes] |
rs6564703 | 0.81[EUR][1000 genomes] |
rs6564704 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
rs67364537 | 0.82[EUR][1000 genomes] |
rs7186075 | 0.99[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs7187216 | 0.81[EUR][1000 genomes] |
rs7190102 | 0.82[EUR][1000 genomes] |
rs7190488 | 0.96[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs7192691 | 0.83[ASN][1000 genomes] |
rs7196084 | 0.88[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs7199398 | 0.84[EUR][1000 genomes] |
rs7200937 | 0.82[EUR][1000 genomes] |
rs7205712 | 0.82[EUR][1000 genomes] |
rs8049118 | 0.81[ASN][1000 genomes] |
rs8049124 | 0.81[ASN][1000 genomes] |
rs8052982 | 0.82[EUR][1000 genomes] |
rs8053230 | 0.85[EUR][1000 genomes] |
rs8054169 | 0.95[ASN][1000 genomes] |
rs8056945 | 0.93[ASN][1000 genomes] |
rs8057083 | 0.84[EUR][1000 genomes] |
rs8060072 | 0.81[EUR][1000 genomes] |
rs8062324 | 0.85[EUR][1000 genomes] |
rs8063650 | 0.85[EUR][1000 genomes] |
rs9673780 | 0.84[EUR][1000 genomes] |
rs9922033 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs9925997 | 0.82[EUR][1000 genomes] |
rs9927594 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs9927598 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs9928163 | 0.81[EUR][1000 genomes] |
rs9929497 | 0.85[EUR][1000 genomes] |
rs9931431 | 0.81[EUR][1000 genomes] |
rs9936175 | 0.82[EUR][1000 genomes] |
rs9939090 | 0.82[EUR][1000 genomes] |
rs9939565 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv530714 | chr16:79661581-79925435 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv833296 | chr16:79692236-79889727 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv833297 | chr16:79732501-79920419 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | esv2755409 | chr16:79776699-79816299 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:79772600-79785600 | Weak transcription | Fetal Lung | lung |
2 | chr16:79775600-79782800 | Weak transcription | Fetal Intestine Small | intestine |