The 2.0 version of rSNPBase

Variant report

Variant rs12720565
Chromosome Location chr1:186881324-186881325
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186839200-186884800 Weak transcription Duodenum Mucosa Duodenum
2 chr1:186854000-186897200 Weak transcription Lung lung
3 chr1:186864600-186897000 Weak transcription Esophagus oesophagus
4 chr1:186866200-186883200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:186866200-186885000 Weak transcription HUVEC blood vessel
6 chr1:186866400-186883000 Weak transcription A549 lung
7 chr1:186868800-186897000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:186869000-186896600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:186871000-186884600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:186871400-186904000 Weak transcription Hela-S3 cervix
11 chr1:186873800-186896800 Weak transcription Small Intestine intestine
12 chr1:186877000-186886000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:186878600-186895000 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:186878800-186888600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:186879200-186888400 Weak transcription Spleen Spleen
16 chr1:186879800-186881800 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr1:186880000-186888800 Strong transcription Primary monocytes fromperipheralblood blood
18 chr1:186880200-186881600 Strong transcription Primary hematopoietic stem cells blood
19 chr1:186880200-186881600 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr1:186880200-186881600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:186880200-186881800 Strong transcription Colon Smooth Muscle Colon
22 chr1:186880200-186882000 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr1:186880200-186882000 Strong transcription Primary neutrophils fromperipheralblood blood
24 chr1:186880200-186882000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:186880400-186881400 Weak transcription Left Ventricle heart
26 chr1:186880400-186883200 Weak transcription Fetal Intestine Small intestine
27 chr1:186880400-186883800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr1:186880400-186891600 Weak transcription Aorta Aorta
29 chr1:186880800-186881400 Strong transcription Fetal Stomach stomach
30 chr1:186880800-186881600 Strong transcription Fetal Intestine Large intestine
31 chr1:186880800-186881600 Strong transcription Sigmoid Colon Sigmoid Colon
32 chr1:186880800-186881600 Strong transcription Stomach Smooth Muscle stomach
33 chr1:186880800-186881800 Strong transcription Duodenum Smooth Muscle Duodenum
34 chr1:186881000-186881400 Enhancers Osteobl bone
35 chr1:186881000-186881600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:186881000-186881600 Weak transcription Stomach Mucosa stomach
37 chr1:186881000-186881800 Strong transcription Adipose Nuclei Adipose
38 chr1:186881000-186881800 Strong transcription Rectal Mucosa Donor 31 rectum
39 chr1:186881000-186881800 Strong transcription Rectal Smooth Muscle rectum
40 chr1:186881200-186881800 Strong transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015