The 2.0 version of rSNPBase

Variant report

Variant rs12720571
Chromosome Location chr1:186895340-186895341
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186854000-186897200 Weak transcription Lung lung
2 chr1:186864600-186897000 Weak transcription Esophagus oesophagus
3 chr1:186868800-186897000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:186869000-186896600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:186871400-186904000 Weak transcription Hela-S3 cervix
6 chr1:186873800-186896800 Weak transcription Small Intestine intestine
7 chr1:186881800-186896800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:186881800-186933600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:186881800-186951200 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:186883800-186906800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:186888800-186897000 Weak transcription Primary neutrophils fromperipheralblood blood
12 chr1:186890000-186924400 Weak transcription Fetal Stomach stomach
13 chr1:186890800-186928400 Strong transcription Monocytes-CD14+_RO01746 blood
14 chr1:186891800-186895600 Weak transcription Aorta Aorta
15 chr1:186892800-186896800 Weak transcription Duodenum Mucosa Duodenum
16 chr1:186892800-186924000 Strong transcription Primary monocytes fromperipheralblood blood
17 chr1:186893000-186895800 Weak transcription Stomach Mucosa stomach
18 chr1:186893000-186896400 Weak transcription NHEK skin
19 chr1:186893200-186895600 Weak transcription Fetal Intestine Large intestine
20 chr1:186894200-186896000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:186894200-186896200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:186894400-186896200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:186894600-186895400 Enhancers Primary hematopoietic stem cells short term culture blood
24 chr1:186894600-186895800 Enhancers NHDF-Ad bronchial
25 chr1:186894600-186896000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr1:186894600-186897400 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr1:186894800-186895400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:186894800-186895400 Enhancers Rectal Smooth Muscle rectum
29 chr1:186894800-186895400 Enhancers Osteobl bone
30 chr1:186894800-186896400 Enhancers Adipose Nuclei Adipose
31 chr1:186895000-186895400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:186895000-186895400 Enhancers Brain Hippocampus Middle brain
33 chr1:186895000-186895600 Enhancers Primary hematopoietic stem cells blood
34 chr1:186895000-186895800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:186895000-186895800 Enhancers Cortex derived primary cultured neurospheres brain
36 chr1:186895000-186897600 Enhancers Placenta Amnion Placenta Amnion
37 chr1:186895200-186895600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr1:186895200-186895600 Weak transcription Fetal Intestine Small intestine
39 chr1:186895200-186896000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:186895200-186896800 Weak transcription HUVEC blood vessel
41 chr1:186895200-186897000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015