Variant report

Variant	rs12722556
Chromosome Location	chr10:6070539-6070540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12722543	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12722549	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6060800-6075800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:6068400-6070800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6068600-6071000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:6069600-6070800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:6070200-6070800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:6070200-6077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:6070400-6077000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr10:6070400-6077600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links