Variant report

Variant	rs12722595
Chromosome Location	chr10:6057181-6057182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12719919	0.83[AMR][1000 genomes]
rs12722525	0.83[AMR][1000 genomes]
rs12722531	0.83[AMR][1000 genomes]
rs12722565	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12722571	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12722582	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12722597	0.89[AMR][1000 genomes]
rs12722600	0.94[AMR][1000 genomes]
rs12722607	0.83[AMR][1000 genomes]
rs34181124	0.83[AMR][1000 genomes]
rs41294645	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6055800-6057200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr10:6055800-6057400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:6055800-6057600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:6055800-6057600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:6055800-6057800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:6055800-6057800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:6055800-6058000	Weak transcription	Lung	lung
8	chr10:6056000-6057200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr10:6056000-6058000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:6056200-6061000	Weak transcription	K562	blood
11	chr10:6056400-6057200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
12	chr10:6056400-6058000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:6056400-6059200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:6056600-6058000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:6056600-6059800	Weak transcription	Stomach Mucosa	stomach
16	chr10:6056800-6058000	Weak transcription	Fetal Thymus	thymus
17	chr10:6056800-6060400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:6057000-6057400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:6057000-6066000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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