Variant report

Variant	rs12722582
Chromosome Location	chr10:6064562-6064563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:6064297-6064647	K562	blood:	n/a	chr10:6064472-6064483 chr10:6064469-6064484 chr10:6064471-6064486
2	MYC	chr10:6064558-6064735	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6056224..6059650-chr10:6062911..6065647,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229664	TF binding region
ENSG00000251922	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12722510	0.88[AMR][1000 genomes]
rs12722525	0.94[AMR][1000 genomes]
rs12722531	0.94[AMR][1000 genomes]
rs12722565	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12722571	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12722595	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12722600	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6057000-6066000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr10:6057400-6068600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:6057800-6069600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr10:6057800-6069800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:6058000-6068600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:6059400-6068800	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:6060000-6065600	Weak transcription	Esophagus	oesophagus
8	chr10:6060400-6070000	Weak transcription	Lung	lung
9	chr10:6060800-6075800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:6061200-6070000	Weak transcription	Spleen	Spleen
11	chr10:6061800-6065800	Weak transcription	Gastric	stomach
12	chr10:6062800-6067800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:6063000-6067400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:6063000-6068400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:6063200-6066600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:6063200-6067000	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:6063400-6064600	Enhancers	Brain Anterior Caudate	brain
18	chr10:6063400-6065000	Enhancers	Placenta	Placenta
19	chr10:6063600-6066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:6063800-6066000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:6064200-6064600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:6064400-6064600	Enhancers	Right Atrium	heart
23	chr10:6064400-6067000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links