Variant report
| Variant | rs12723969 |
|---|---|
| Chromosome Location | chr1:179733756-179733757 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1048418 | 1.00[CHB][hapmap] |
| rs10494523 | 1.00[CHB][hapmap] |
| rs10913889 | 0.83[CEU][hapmap] |
| rs10913893 | 1.00[CHB][hapmap] |
| rs10913905 | 1.00[CHB][hapmap] |
| rs10913909 | 1.00[CHB][hapmap] |
| rs11577513 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11590974 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12119431 | 1.00[CHB][hapmap] |
| rs12130143 | 0.82[CEU][hapmap] |
| rs12136091 | 1.00[CHB][hapmap] |
| rs12136465 | 1.00[CHB][hapmap] |
| rs12142457 | 1.00[CHB][hapmap] |
| rs12143942 | 1.00[CHB][hapmap] |
| rs12756362 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12756748 | 0.83[CEU][hapmap] |
| rs16854910 | 1.00[CHB][hapmap] |
| rs17279065 | 0.82[GIH][hapmap] |
| rs17370139 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34000081 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34233788 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34831485 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35698624 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3845388 | 1.00[CHB][hapmap] |
| rs4301600 | 1.00[CHB][hapmap] |
| rs7518566 | 1.00[CHB][hapmap] |
| rs7531195 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009961 | chr1:179714247-179790110 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011407 | chr1:179733193-179799430 | Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
