Variant report
| Variant | rs17279065 |
|---|---|
| Chromosome Location | chr1:179733193-179733194 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10913883 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11580185 | 0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap] |
| rs11800623 | 0.81[EUR][1000 genomes] |
| rs11812078 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12723969 | 0.82[GIH][hapmap] |
| rs16854685 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs16854692 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17370180 | 0.86[JPT][hapmap] |
| rs2318392 | 1.00[JPT][hapmap] |
| rs2318393 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs3845384 | 1.00[JPT][hapmap] |
| rs3893369 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs61828391 | 0.85[ASN][1000 genomes] |
| rs6425592 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
| rs6683249 | 0.85[ASN][1000 genomes] |
| rs6696060 | 0.85[ASN][1000 genomes] |
| rs7517022 | 0.85[ASN][1000 genomes] |
| rs7544460 | 1.00[JPT][hapmap] |
| rs7544925 | 1.00[JPT][hapmap] |
| rs7549144 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7549263 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009961 | chr1:179714247-179790110 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011407 | chr1:179733193-179799430 | Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17279065 | FAM163A | cis | parietal | SCAN |
| rs17279065 | ANGPTL1 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
