Variant report

Variant	rs61828391
Chromosome Location	chr1:179732142-179732143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11812078	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16854692	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370180	0.81[ASN][1000 genomes]
rs6425592	0.84[ASN][1000 genomes]
rs6683249	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696060	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517022	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545356	0.92[ASN][1000 genomes]
rs7549144	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549263	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179731400-179732200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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