Variant report
| Variant | rs7545356 |
|---|---|
| Chromosome Location | chr1:179737105-179737106 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:179731475..179734464-chr1:179736181..179738342,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10913883 | 0.89[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11580185 | 0.86[JPT][hapmap] |
| rs11812078 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16854685 | 0.87[CEU][hapmap] |
| rs16854692 | 0.87[CEU][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2318392 | 0.88[CEU][hapmap] |
| rs2318393 | 0.87[CEU][hapmap] |
| rs3845384 | 0.88[CEU][hapmap] |
| rs3893369 | 0.81[CEU][hapmap] |
| rs4652453 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs56166650 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs56965719 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58204878 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61828391 | 0.92[ASN][1000 genomes] |
| rs6425592 | 0.87[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs6425593 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6683249 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6696060 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs68141282 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7514717 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7517022 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7544460 | 0.88[CEU][hapmap] |
| rs7544925 | 0.88[CEU][hapmap] |
| rs7549144 | 0.87[CEU][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7549263 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009961 | chr1:179714247-179790110 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011407 | chr1:179733193-179799430 | Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179737000-179756000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
