Variant report

Variant	rs12729804
Chromosome Location	chr1:211897758-211897759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11590937	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12742934	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12747691	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35768943	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6669055	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7513065	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7540628	0.89[EUR][1000 genomes]
rs785572	0.83[EUR][1000 genomes]
rs894857	0.89[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12729804	ILF3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211896400-211909000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211896600-211898800	Enhancers	Pancreas	Pancrea
4	chr1:211896600-211898800	Enhancers	Spleen	Spleen
5	chr1:211897000-211898400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:211897200-211899200	Enhancers	HepG2	liver
7	chr1:211897600-211898000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:211897600-211898800	Enhancers	Fetal Muscle Leg	muscle
9	chr1:211897600-211898800	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links