Variant report

Variant	rs894857
Chromosome Location	chr1:211901341-211901342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12729804	0.89[AFR][1000 genomes]
rs72747026	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7513065	1.00[ASW][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs894857	CD34	cis	cerebellum	SCAN
rs894857	C1orf97	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211896400-211909000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211898800-211903800	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211898800-211906800	Weak transcription	Pancreas	Pancrea
5	chr1:211899000-211904800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:211900200-211904600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:211900200-211908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:211900800-211903800	Weak transcription	Brain Anterior Caudate	brain
9	chr1:211901200-211904800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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