The 2.0 version of rSNPBase

Variant report

Variant rs12729885
Chromosome Location chr1:171289803-171289804
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171283600-171293000 Weak transcription Brain Angular Gyrus brain
2 chr1:171283600-171297800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr1:171283800-171291000 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:171283800-171292600 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr1:171283800-171293000 Weak transcription Brain Substantia Nigra brain
6 chr1:171284000-171290200 Weak transcription Colonic Mucosa Colon
7 chr1:171284000-171291200 Weak transcription Brain Anterior Caudate brain
8 chr1:171284000-171292800 Weak transcription Psoas Muscle Psoas
9 chr1:171284000-171294600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:171284000-171295200 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:171284000-171295400 Weak transcription Stomach Mucosa stomach
12 chr1:171284000-171312200 Weak transcription Brain Hippocampus Middle brain
13 chr1:171284200-171291000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:171284200-171291400 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr1:171284200-171294400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:171284200-171294600 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:171284200-171295400 Weak transcription Esophagus oesophagus
18 chr1:171284200-171295800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr1:171284200-171307400 Weak transcription Primary T cells fromperipheralblood blood
20 chr1:171284200-171313600 Weak transcription Right Ventricle heart
21 chr1:171284200-171313800 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:171284600-171292400 Weak transcription Primary B cells from peripheral blood blood
23 chr1:171286800-171309200 Weak transcription Placenta Amnion Placenta Amnion
24 chr1:171288000-171290000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
25 chr1:171288200-171293800 Strong transcription Liver Liver
26 chr1:171288400-171313000 Weak transcription Gastric stomach
27 chr1:171288600-171290200 Strong transcription Fetal Intestine Large intestine
28 chr1:171288600-171290200 Strong transcription Fetal Intestine Small intestine
29 chr1:171288600-171290600 Weak transcription Placenta Placenta
30 chr1:171288600-171299400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:171288600-171303000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:171288600-171303800 Weak transcription Fetal Muscle Leg muscle
33 chr1:171288600-171312400 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:171288800-171290000 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr1:171288800-171290400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:171289200-171290000 Strong transcription Ovary ovary
37 chr1:171289400-171291000 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr1:171289400-171299400 Weak transcription Stomach Smooth Muscle stomach
39 chr1:171289400-171301000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr1:171289400-171309600 Weak transcription Primary B cells from cord blood blood
41 chr1:171289400-171313400 Weak transcription Fetal Lung lung
42 chr1:171289600-171291200 Weak transcription Brain Cingulate Gyrus brain
43 chr1:171289600-171294800 Weak transcription Primary hematopoietic stem cells blood
44 chr1:171289600-171295600 Weak transcription Lung lung
45 chr1:171289600-171309000 Weak transcription Primary T helper naive cells fromperipheralblood blood
46 chr1:171289600-171309000 Weak transcription Pancreas Pancrea
47 chr1:171289600-171313000 Weak transcription Adipose Nuclei Adipose
48 chr1:171289800-171298000 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr1:171289800-171298000 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr1:171289800-171298200 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015