Variant report

Variant	rs1273204
Chromosome Location	chr14:65296664-65296665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs114813	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12587537	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1695751	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2016522	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs229609	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs229611	0.95[CEU][hapmap];0.92[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs229616	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs229618	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs229619	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs229667	0.88[CEU][hapmap]
rs2649196	0.94[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs28495181	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs423927	0.85[CHB][hapmap]
rs438035	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1273204	RAB15	Cis_1M	lymphoblastoid	RTeQTL
rs1273204	CHURC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65292000-65297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65292600-65297800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:65293600-65297400	Weak transcription	Fetal Heart	heart
4	chr14:65294000-65297800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr14:65294800-65297600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:65294800-65297800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:65295200-65297400	Weak transcription	Left Ventricle	heart
8	chr14:65295200-65297400	Weak transcription	Right Atrium	heart
9	chr14:65295200-65297400	Weak transcription	Right Ventricle	heart
10	chr14:65296200-65297200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65296400-65308600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr14:65296600-65296800	Enhancers	Psoas Muscle	Psoas
13	chr14:65296600-65297400	Genic enhancers	K562	blood
14	chr14:65296600-65298600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr14:65296600-65300200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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