Variant report

Variant	rs2016522
Chromosome Location	chr14:65294341-65294342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs114813	0.83[CEU][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12435626	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12436545	0.85[JPT][hapmap]
rs12587537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273204	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1695751	0.83[CEU][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17102190	0.85[JPT][hapmap]
rs229609	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs229611	0.81[EUR][1000 genomes]
rs229616	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs229618	0.83[CEU][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs229619	0.83[CEU][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2649196	0.88[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs28495181	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3819918	0.85[JPT][hapmap]
rs438035	0.83[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs72625635	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2016522	CHURC1	cis	parietal	SCAN
rs2016522	CHURC1	cis	lymphoblastoid	seeQTL
rs2016522	RDH11	cis	cerebellum	SCAN
rs2016522	RAB15	Cis_1M	lymphoblastoid	RTeQTL
rs2016522	CHURC1	Cis_1M	lymphoblastoid	RTeQTL
rs2016522	CHURC1	cis	cerebellum	SCAN
rs2016522	GPHB5	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65289800-65295200	Enhancers	Left Ventricle	heart
2	chr14:65290000-65295200	Enhancers	Psoas Muscle	Psoas
3	chr14:65290600-65294400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:65291000-65295600	Enhancers	Fetal Muscle Leg	muscle
5	chr14:65291600-65296000	Enhancers	K562	blood
6	chr14:65292000-65297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:65292400-65294800	Enhancers	Fetal Muscle Trunk	muscle
8	chr14:65292600-65297800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:65292800-65295000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr14:65293000-65294800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:65293000-65294800	Weak transcription	Right Ventricle	heart
12	chr14:65293600-65294600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr14:65293600-65295600	Enhancers	HSMMtube	muscle
14	chr14:65293600-65297400	Weak transcription	Fetal Heart	heart
15	chr14:65293800-65294400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr14:65293800-65294400	Weak transcription	HMEC	breast
17	chr14:65294000-65294400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:65294000-65294600	Weak transcription	Right Atrium	heart
19	chr14:65294000-65297800	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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