Variant report

Variant	rs12436545
Chromosome Location	chr14:65296541-65296542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12433757	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12587537	0.85[JPT][hapmap]
rs17102190	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs17180385	0.88[CEU][hapmap]
rs1957416	0.85[CEU][hapmap]
rs2016522	0.85[JPT][hapmap]
rs229669	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs230715	0.87[CEU][hapmap]
rs230718	1.00[CEU][hapmap]
rs230723	0.85[CEU][hapmap]
rs3819918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7144515	0.85[CEU][hapmap]
rs72625633	0.88[EUR][1000 genomes]
rs72625634	1.00[EUR][1000 genomes]
rs72625635	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625636	0.81[EUR][1000 genomes]
rs72625637	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65292000-65297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65292600-65297800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:65293600-65297400	Weak transcription	Fetal Heart	heart
4	chr14:65294000-65297800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr14:65294800-65297600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:65294800-65297800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:65295200-65296600	Weak transcription	Psoas Muscle	Psoas
8	chr14:65295200-65297400	Weak transcription	Left Ventricle	heart
9	chr14:65295200-65297400	Weak transcription	Right Atrium	heart
10	chr14:65295200-65297400	Weak transcription	Right Ventricle	heart
11	chr14:65295600-65296600	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:65296200-65296600	Enhancers	K562	blood
13	chr14:65296200-65297200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:65296400-65308600	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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