Variant report

Variant	rs1957416
Chromosome Location	chr14:65369329-65369330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65368343..65372150-chr14:65374320..65377224,3	K562	blood:

Variant related genes	Relation type
ENSG00000252497	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10121	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11540871	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12433757	0.85[CEU][hapmap]
rs12435626	0.85[CEU][hapmap]
rs12436545	0.85[CEU][hapmap]
rs1467569	0.89[TSI][hapmap]
rs1467573	0.89[TSI][hapmap]
rs17102190	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs17180385	1.00[CEU][hapmap]
rs17180532	0.85[CEU][hapmap]
rs17883073	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957432	0.89[TSI][hapmap]
rs2273475	0.85[CEU][hapmap]
rs2285003	0.85[CEU][hapmap]
rs229669	1.00[CEU][hapmap]
rs230698	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs230700	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs230701	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs230715	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs230718	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs230723	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3819918	0.85[CEU][hapmap]
rs4899150	0.83[TSI][hapmap]
rs57319601	0.94[ASN][1000 genomes]
rs57674166	0.97[ASN][1000 genomes]
rs61012404	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61538903	0.94[ASN][1000 genomes]
rs62621845	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573571	0.85[CEU][hapmap]
rs7143541	0.85[TSI][hapmap]
rs7144515	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7144637	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72625643	0.81[EUR][1000 genomes]
rs72625644	0.81[EUR][1000 genomes]
rs72625645	0.81[EUR][1000 genomes]
rs72625646	0.81[EUR][1000 genomes]
rs72625647	0.81[EUR][1000 genomes]
rs72625648	0.81[EUR][1000 genomes]
rs73279812	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73279816	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73279823	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73279833	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73279834	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73279839	0.83[ASN][1000 genomes]
rs73281764	0.94[ASN][1000 genomes]
rs73281765	0.97[ASN][1000 genomes]
rs8008745	0.89[TSI][hapmap]
rs8009996	0.89[TSI][hapmap]
rs8019346	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1311	chr14:65352722-65379802	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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