Variant report

Variant	rs72625643
Chromosome Location	chr14:65340964-65340965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65337480..65342344-chr14:65343661..65346952,7	K562	blood:
2	chr14:65335678..65337852-chr14:65340686..65343364,4	K562	blood:
3	chr14:65339336..65342170-chr14:65344916..65348390,5	K562	blood:
4	chr14:65340678..65342552-chr14:65345279..65347543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070182	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17102258	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767870	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957416	0.81[EUR][1000 genomes]
rs2181127	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs230698	0.90[ASN][1000 genomes]
rs230700	0.90[ASN][1000 genomes]
rs230701	0.90[ASN][1000 genomes]
rs230715	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs230718	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs230723	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs372933	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs380741	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61012404	0.87[EUR][1000 genomes]
rs66511472	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66883381	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144515	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144637	0.87[EUR][1000 genomes]
rs72625636	0.90[ASN][1000 genomes]
rs72625637	0.90[ASN][1000 genomes]
rs72625638	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625641	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625642	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625644	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625646	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279812	0.87[EUR][1000 genomes]
rs73279816	0.87[EUR][1000 genomes]
rs73279823	0.87[EUR][1000 genomes]
rs73279833	0.87[EUR][1000 genomes]
rs73279834	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65331800-65342400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr14:65334200-65342000	Weak transcription	Right Atrium	heart
3	chr14:65335600-65344600	Weak transcription	Right Ventricle	heart
4	chr14:65338400-65341000	Weak transcription	K562	blood
5	chr14:65339000-65342200	Enhancers	Psoas Muscle	Psoas
6	chr14:65339400-65342200	Weak transcription	Left Ventricle	heart
7	chr14:65339400-65344200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:65340800-65342400	Enhancers	Fetal Heart	heart

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