Variant report

Variant	rs230715
Chromosome Location	chr14:65320549-65320550
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65313751..65315359-chr14:65318780..65321450,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10121	1.00[CHB][hapmap]
rs12433757	0.85[CEU][hapmap]
rs12435626	0.82[CEU][hapmap]
rs12436545	0.87[CEU][hapmap]
rs17102190	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs17102258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17180385	1.00[CEU][hapmap]
rs17180532	0.82[CEU][hapmap]
rs17767870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957416	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2181127	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273475	0.87[CEU][hapmap]
rs2285003	0.82[CEU][hapmap]
rs229669	1.00[CEU][hapmap]
rs230698	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs230700	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs230701	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs230718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs230723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs372933	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs380741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3819918	0.82[CEU][hapmap]
rs61012404	0.82[EUR][1000 genomes]
rs6573571	0.82[CEU][hapmap]
rs66511472	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66883381	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7144515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144637	0.82[EUR][1000 genomes]
rs72625636	1.00[ASN][1000 genomes]
rs72625637	1.00[ASN][1000 genomes]
rs72625638	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625640	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625641	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625642	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625643	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625644	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625645	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625646	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625647	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625648	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73279812	0.82[EUR][1000 genomes]
rs73279816	0.82[EUR][1000 genomes]
rs73279823	0.82[EUR][1000 genomes]
rs73279833	0.82[EUR][1000 genomes]
rs73279834	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs230715	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65315400-65324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:65318200-65321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65318400-65322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:65318800-65320600	Enhancers	K562	blood
5	chr14:65319000-65320600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:65319400-65321400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:65319400-65324200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:65319400-65332600	Weak transcription	Right Atrium	heart
9	chr14:65320000-65320600	Enhancers	Psoas Muscle	Psoas
10	chr14:65320200-65328400	Weak transcription	Fetal Heart	heart
11	chr14:65320400-65321400	Weak transcription	Left Ventricle	heart
12	chr14:65320400-65321600	Weak transcription	Spleen	Spleen
13	chr14:65320400-65322600	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links