Variant report

Variant	rs10121
Chromosome Location	chr14:65412773-65412774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:65412562-65412795	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr14:65412486-65413169	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr14:65412185-65413244	A549	lung:	n/a	n/a
4	POLR2A	chr14:65409058-65413386	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65411390..65415173-chr14:65438187..65441044,4	MCF-7	breast:
2	chr14:65395801..65398640-chr14:65409977..65412797,2	K562	blood:
3	chr14:65407165..65409389-chr14:65411251..65413100,2	K562	blood:
4	chr14:65412526..65414194-chr14:65452328..65453978,2	MCF-7	breast:
5	chr14:65381131..65382928-chr14:65411103..65413469,2	MCF-7	breast:
6	chr14:65408459..65411716-chr14:65412606..65416966,4	MCF-7	breast:
7	chr14:65409026..65413439-chr14:65416032..65420633,4	MCF-7	breast:

No data

Variant related genes	Relation type
GPX2	TF binding region
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000139998	Chromatin interaction
ENSG00000176153	Chromatin interaction
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11540871	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102190	0.82[CHB][hapmap]
rs17180532	1.00[MEX][hapmap]
rs17880145	0.81[AFR][1000 genomes]
rs17883073	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957416	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs230698	0.82[CHB][hapmap]
rs230700	0.82[CHB][hapmap]
rs230701	0.82[CHB][hapmap]
rs230715	1.00[CHB][hapmap]
rs230718	1.00[CHB][hapmap]
rs230723	1.00[CHB][hapmap]
rs28493109	0.90[EUR][1000 genomes]
rs57319601	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57674166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61012404	0.86[ASN][1000 genomes]
rs61538903	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62621845	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143541	0.95[TSI][hapmap]
rs7144515	1.00[CHB][hapmap]
rs7144637	0.86[ASN][1000 genomes]
rs7154903	1.00[MEX][hapmap]
rs73279812	0.86[ASN][1000 genomes]
rs73279816	0.86[ASN][1000 genomes]
rs73279823	0.86[ASN][1000 genomes]
rs73279833	0.86[ASN][1000 genomes]
rs73279834	0.86[ASN][1000 genomes]
rs73279839	0.86[ASN][1000 genomes]
rs73281764	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73281765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019346	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10121	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
3	chr14:65383000-65419400	Weak transcription	K562	blood
4	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
6	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:65399000-65428000	Weak transcription	NHLF	lung
8	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
11	chr14:65401600-65413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65401600-65435000	Weak transcription	NH-A	brain
13	chr14:65402400-65415000	Weak transcription	Osteobl	bone
14	chr14:65403000-65412800	Strong transcription	Thymus	Thymus
15	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
16	chr14:65404400-65414200	Weak transcription	Right Ventricle	heart
17	chr14:65404400-65415000	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:65404400-65416600	Weak transcription	Psoas Muscle	Psoas
19	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:65404600-65413400	Weak transcription	HSMMtube	muscle
21	chr14:65404600-65414600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:65404600-65415600	Weak transcription	Fetal Heart	heart
23	chr14:65404600-65418200	Weak transcription	Brain Angular Gyrus	brain
24	chr14:65404600-65419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:65404800-65415000	Weak transcription	Ovary	ovary
26	chr14:65405000-65417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:65405400-65413200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr14:65405800-65416200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:65406000-65413000	Strong transcription	Adipose Nuclei	Adipose
30	chr14:65406400-65415600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:65406600-65413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:65406600-65438000	Weak transcription	Fetal Kidney	kidney
33	chr14:65407400-65414800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:65407400-65415200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:65407600-65413400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:65407600-65414600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:65407800-65412800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:65407800-65417400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:65408000-65412800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:65408400-65414200	Weak transcription	Spleen	Spleen
41	chr14:65408400-65415400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:65408600-65414000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:65409200-65416000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:65409400-65414000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:65409600-65413800	Weak transcription	Gastric	stomach
46	chr14:65409600-65428400	Strong transcription	Fetal Stomach	stomach
47	chr14:65409800-65415200	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr14:65410000-65414400	Weak transcription	Aorta	Aorta
49	chr14:65410000-65414800	Enhancers	HepG2	liver
50	chr14:65410000-65417000	Weak transcription	Rectal Smooth Muscle	rectum

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