Variant report

Variant	rs73279834
Chromosome Location	chr14:65352544-65352545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65347011..65349276-chr14:65350145..65352997,3	MCF-7	breast:
2	chr14:65345386..65349759-chr14:65351524..65353392,4	K562	blood:
3	chr14:65346800..65348898-chr14:65351625..65354536,2	K562	blood:
4	chr14:65352038..65354745-chr14:65354823..65356401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070182	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10121	0.86[ASN][1000 genomes]
rs11540871	0.86[ASN][1000 genomes]
rs17102258	0.82[EUR][1000 genomes]
rs17767870	0.82[EUR][1000 genomes]
rs17883073	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17883620	0.82[AFR][1000 genomes]
rs1957416	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2181127	0.82[EUR][1000 genomes]
rs230697	0.83[AFR][1000 genomes]
rs230715	0.82[EUR][1000 genomes]
rs230717	0.81[AFR][1000 genomes]
rs230718	0.82[EUR][1000 genomes]
rs230723	0.82[EUR][1000 genomes]
rs2649194	0.81[AFR][1000 genomes]
rs372933	0.82[EUR][1000 genomes]
rs375038	0.88[AFR][1000 genomes]
rs376295	0.81[AFR][1000 genomes]
rs380741	0.82[EUR][1000 genomes]
rs57319601	0.83[ASN][1000 genomes]
rs57674166	0.86[ASN][1000 genomes]
rs60454817	0.88[AFR][1000 genomes]
rs61012404	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61538903	0.83[ASN][1000 genomes]
rs62621845	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66511472	0.80[EUR][1000 genomes]
rs66883381	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7144515	0.80[AFR][1000 genomes]
rs7144637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625638	0.82[EUR][1000 genomes]
rs72625640	0.82[EUR][1000 genomes]
rs72625641	0.82[EUR][1000 genomes]
rs72625642	0.82[EUR][1000 genomes]
rs72625643	0.87[EUR][1000 genomes]
rs72625644	0.87[EUR][1000 genomes]
rs72625645	0.87[EUR][1000 genomes]
rs72625646	0.87[EUR][1000 genomes]
rs72625647	0.87[EUR][1000 genomes]
rs72625648	0.87[EUR][1000 genomes]
rs73279812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279839	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73281764	0.83[ASN][1000 genomes]
rs73281765	0.86[ASN][1000 genomes]
rs8019346	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3693169	chr14:65344400-65381068	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65352200-65353400	Enhancers	K562	blood

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