Variant report

Variant	rs17883620
Chromosome Location	chr14:65409643-65409644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr14:65409121-65409908	HepG2	liver:	n/a	n/a
2	ARID3A	chr14:65409231-65409961	HepG2	liver:	n/a	n/a
3	RAD21	chr14:65409052-65409942	HepG2	liver:	n/a	n/a
4	MAZ	chr14:65409362-65410001	HepG2	liver:	n/a	n/a
5	TCF12	chr14:65408664-65410141	A549	lung:	n/a	n/a
6	TEAD4	chr14:65409090-65409952	HepG2	liver:	n/a	n/a
7	MAFF	chr14:65409523-65409706	K562	blood:	n/a	n/a
8	SP1	chr14:65409063-65409968	A549	lung:	n/a	chr14:65409510-65409524 chr14:65409664-65409673 chr14:65409663-65409672 chr14:65409887-65409901 chr14:65409663-65409672
9	EP300	chr14:65409271-65409982	HepG2	liver:	n/a	n/a
10	FOXA1	chr14:65409317-65409908	HepG2	liver:	n/a	n/a
11	JUND	chr14:65409289-65409805	HepG2	liver:	n/a	n/a
12	HEY1	chr14:65408728-65409679	HepG2	liver:	n/a	n/a
13	POLR2A	chr14:65409086-65409646	A549	lung:	n/a	n/a
14	YY1	chr14:65409083-65409751	A549	lung:	n/a	n/a
15	FOXA1	chr14:65409296-65409934	HepG2	liver:	n/a	n/a
16	SP1	chr14:65409113-65409991	A549	lung:	n/a	chr14:65409510-65409524 chr14:65409664-65409673 chr14:65409663-65409672 chr14:65409887-65409901 chr14:65409663-65409672
17	POLR2A	chr14:65409029-65409782	HepG2	liver:	n/a	n/a
18	NFIC	chr14:65409300-65409856	HepG2	liver:	n/a	n/a
19	REST	chr14:65409373-65409847	MCF-7	breast:	n/a	n/a
20	POLR2A	chr14:65409043-65410029	HepG2	liver:	n/a	n/a
21	ZEB1	chr14:65409192-65409946	HepG2	liver:	n/a	n/a
22	RFX5	chr14:65409282-65409754	HepG2	liver:	n/a	n/a
23	POLR2A	chr14:65409135-65409979	HepG2	liver:	n/a	n/a
24	TAF1	chr14:65409053-65409883	A549	lung:	n/a	n/a
25	MYBL2	chr14:65409269-65410054	HepG2	liver:	n/a	n/a
26	FOXA1	chr14:65409312-65409885	HepG2	liver:	n/a	n/a
27	FOXA2	chr14:65409285-65409929	A549	lung:	n/a	n/a
28	MXI1	chr14:65409226-65409791	HepG2	liver:	n/a	n/a
29	POLR2A	chr14:65408714-65409668	HepG2	liver:	n/a	n/a
30	EP300	chr14:65409286-65409736	HepG2	liver:	n/a	n/a
31	RCOR1	chr14:65409288-65410006	HepG2	liver:	n/a	n/a
32	MAFF	chr14:65409363-65409884	HepG2	liver:	n/a	n/a
33	POLR2A	chr14:65404124-65409980	HepG2	liver:	n/a	n/a
34	SP1	chr14:65409307-65409956	HepG2	liver:	n/a	chr14:65409510-65409524 chr14:65409664-65409673 chr14:65409663-65409672 chr14:65409887-65409901 chr14:65409663-65409672
35	EP300	chr14:65409115-65410041	A549	lung:	n/a	n/a
36	TBP	chr14:65409149-65409964	HepG2	liver:	n/a	n/a
37	MAFK	chr14:65409385-65409817	HepG2	liver:	n/a	n/a
38	BACH1	chr14:65409423-65409762	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr14:65409196-65409746	HepG2	liver:	n/a	n/a
40	FOXA1	chr14:65409298-65409899	HepG2	liver:	n/a	n/a
41	MAFK	chr14:65409416-65409721	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr14:65409140-65409649	A549	lung:	n/a	n/a
43	FOXA2	chr14:65409402-65409965	HepG2	liver:	n/a	n/a
44	MBD4	chr14:65409144-65409874	HepG2	liver:	n/a	n/a
45	ELF1	chr14:65409381-65409788	HepG2	liver:	n/a	n/a
46	CEBPD	chr14:65409196-65409762	HepG2	liver:	n/a	n/a
47	EP300	chr14:65409207-65409986	HepG2	liver:	n/a	n/a
48	ELF1	chr14:65409286-65409671	HepG2	liver:	n/a	n/a
49	REST	chr14:65409041-65409946	A549	lung:	n/a	n/a
50	CEBPB	chr14:65409396-65409836	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65407129..65411344-chr14:65424634..65427852,4	MCF-7	breast:
2	chr14:65408375..65411114-chr14:65437552..65439159,4	MCF-7	breast:
3	chr14:65379820..65382321-chr14:65409596..65411872,2	MCF-7	breast:
4	chr14:65380406..65382948-chr14:65406634..65410888,4	MCF-7	breast:
5	chr14:65409026..65413439-chr14:65416032..65420633,4	MCF-7	breast:

Variant related genes	Relation type
GPX2	TF binding region
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction
ENSG00000139998	Chromatin interaction

rs_ID	r²[population]
rs61012404	0.82[AFR][1000 genomes]
rs7144637	0.82[AFR][1000 genomes]
rs73279812	0.82[AFR][1000 genomes]
rs73279816	0.80[AFR][1000 genomes]
rs73279823	0.82[AFR][1000 genomes]
rs73279833	0.82[AFR][1000 genomes]
rs73279834	0.82[AFR][1000 genomes]
rs73279839	0.82[AFR][1000 genomes]
rs8019346	0.82[AFR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
3	chr14:65383000-65419400	Weak transcription	K562	blood
4	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
8	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:65397400-65411200	Strong transcription	Dnd41	blood
10	chr14:65399000-65428000	Weak transcription	NHLF	lung
11	chr14:65399200-65412400	Weak transcription	Brain Germinal Matrix	brain
12	chr14:65400000-65410400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:65400800-65410200	Weak transcription	Fetal Lung	lung
16	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
17	chr14:65401600-65412400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:65401600-65413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:65401600-65435000	Weak transcription	NH-A	brain
20	chr14:65401800-65412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:65402400-65415000	Weak transcription	Osteobl	bone
22	chr14:65402600-65410200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr14:65403000-65412800	Strong transcription	Thymus	Thymus
24	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
25	chr14:65404000-65410600	Enhancers	Pancreas	Pancrea
26	chr14:65404000-65412200	Strong transcription	Fetal Thymus	thymus
27	chr14:65404400-65410200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:65404400-65410400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:65404400-65414200	Weak transcription	Right Ventricle	heart
30	chr14:65404400-65415000	Weak transcription	Brain Hippocampus Middle	brain
31	chr14:65404400-65416600	Weak transcription	Psoas Muscle	Psoas
32	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:65404600-65410400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:65404600-65410600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:65404600-65412200	Weak transcription	Brain Anterior Caudate	brain
36	chr14:65404600-65413400	Weak transcription	HSMMtube	muscle
37	chr14:65404600-65414600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:65404600-65415600	Weak transcription	Fetal Heart	heart
39	chr14:65404600-65418200	Weak transcription	Brain Angular Gyrus	brain
40	chr14:65404600-65419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:65404800-65415000	Weak transcription	Ovary	ovary
42	chr14:65405000-65409800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:65405000-65417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:65405200-65410400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:65405400-65410000	Strong transcription	Aorta	Aorta
46	chr14:65405400-65413200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr14:65405600-65410200	Strong transcription	Fetal Muscle Leg	muscle
48	chr14:65405800-65416200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:65406000-65413000	Strong transcription	Adipose Nuclei	Adipose
50	chr14:65406200-65410000	Active TSS	Rectal Smooth Muscle	rectum

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